Version 2.0
D B T G R

DataBase of Tunicate Gene Regulation
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About DBTGR

Ci-opsin1

Gene: Ci-opsin1
Ghost cluster: 6713
Reference:
  • Kusakabe T., Yoshida, R., Ikeda, Y., Tsuda, M. (2004). "Computational discovery of DNA motifs associated with cell type-specific gene expression in Ciona." Dev Biol 276:563-580. (PUBMED)
This construct is available from Prof. Kusakabe.
Detected expression Expression was detected.

Construct description Name: pCi-opsin1-EGFP(5k)
5'-end primer with a EcoRI restriction site: CAGAATTCGTTCAAGTTGTGCGGAAATT
3'-end primer with a SmaI restriction site: CAACCCGGGAATGCTGCGTTTATTTCCTG
Vector: pBluescript-EGFP
Insert size: 4966 bps
Insert sequence:
GTTCAAGTTG TGCGGAAATT ATTCTCTTTT AGAACGTTTG TGACAAGTAT AAATAAATCA CAAGAAAGTA AAGTTTGTTT CATTGCTAAT CATGACAATA TACTTTGAAT ATGTGTTGTA GGTTGCAGAA GTGGTTCAGA TAAGTATATA ACCCAAAAAG TGCGGTTTAC TGGTGCCAAA AAGTGGTATC TGTAATATAG TAGAGTGGAA AAAGATGGGA CACTTAATCG CATATTGCTC AGTATTTCCA AATTCAAATT GTATGATTCT TTTGGGGTAT AATACCACGA ATTGGTACTA TGATTTTTTT AATATTGACT ACAATTCCCG GCTTATTCTC TGTGTTTTAG AATTTGTAAA ATTACACCTG TTGGGCGAAT TTCTCATATA TGTTTTATTA CATATTGTTT AAATTGCAGT CAATACTTCA CATCTTTTAT CACTAATTAG ATATTTACCC CTGCCTATTT TTCTCTTATA CAGTAGGATG GGGAAAATAG AAAACAGTAG ATTTTGAACA GGTAAAAAAA TGCGAAATAG TAAGGTGCTA TTTTGAATGT TGCAAAAAAA ATACTAAAGC CGATAAATAG GTTAACTACA AGTTGCAGAA TACTGCTGAT GTAAATATAT TTCAATTAGG TGTCCCATCT TCCACCACAT TGTAGTTTTG TATGTTTTCA TTACAAAACT TTTAAAGGTT TGCGTTTAAT TTAATAATTT ATACCTCAGG GGTTATTCAA CTACAAGATA CTGATATATA ATAAAAAGAT AATATTTAAA AACATATTCG AAATTCAGTC ATTTGCATTT GGAGATGTTT TATGAGAAGT ATAACTTGTC CGAAAAACAT AGTAGTAATA CCCAATTTGT GACAAAAATG TATATACCTT ATTAATAGCT ACTATTGATT TTCTGTTATT GCAAGTTCAT ATACATTTGT AGGATACAAT CACAGAAATA AAAAATAATA GAACGCGCAT CTCTAATGTC GGCAAAGGAG AGAGGTGATA CATTCGCTCT CTTTCGCGGG TCGTTCCCGT TTACTATTGT AGTCAATAAA ATCGACGGCG TTTATTTAGT GTTTCTTGAT TTTTAGACTT AATTTAAAGT TATAGTGTAA AACAACTATT TTCTAATATG TATTTATTTC TAACAAACCG TTTGTTTAAA ATTTTTAATT AAGTTTATTA AATTATTAAA TTTCCTAAAC AAGTGGTAAA CTGTAAGCAT TAACTTACTA AATAACTAAA CTGGCCAAAT AAACTTGAAT AGCTGGTGTA TGTGTGAAAT AAACAGCTAA AACCTTTCAA AAATACTGTG CGCCTATCTT TTACAATGGA GACGAAGCGA AATGGGGACG GAGTTGGCGG TCACGTGAAT AGAAAAAAGA ATATATCACG GTTTTGGGCA GTTGCGCGTT CTACTCTTTT TTATTTCTGT GGATACAATA TTTATCCATT GATGTTCGAA CAAAACCCAC CGTCTTTTAA ACAATATCCA TTGTTATACA GTTGATGTAA TGTAGGTAAC ATGTTACAAA CTATAGCAGT ATAAGGCAAG GAAAAAATGT TCAAACTTGA TTTTCAAAGC GTACAGTATT ATTTCGAATT ATTTACGTGT ATTCCTAATA ATAAGTACAC CTAATAATCA AAATTAACAA TGATTTTAAA CTGTCCCATC TTATCCTGTG TTTTATCGAA TTTGTAAAAT TCTATCTGTT GTGCGAATTG CTAAATAACT CCCCGTGTGT TTTATTATAT TTTTTTGAAT TGTTTTCAAT TAATAAAGAA ATGATGGTAC TAATTCGTGG TATTACCCAA AAACCGTCAT CTATTTTGAT TTTGAAAATA TGTGGCAACA TGTGCTTAAG TGTCCCATCT TCCCCCATTG TATATCAGTT TTTATAACGA AATCAAAACG TTTTTTTTTA GTTTATAATA CAAAATCAAA CTGTGTAAAT AGTATTCTAC AACTTTAGTT ACCGAAATGA ACCGGCTGTG CTGATTTTTT GCCATGTTAA AGATGAAATG TATATTAAAC ATTTTTTATA AACATTTGCA ACTATACAGT CCAGCAGAAT TGTACAAAAT AATGGTCAAG TTATGGGATT TGAGGTAAAA TCATGTAATT TGGTACACTT ATAGAACTGG ACATGCTTAT TATTTTTAAA CTCAGACCCA TCTCGAAATC TCTTTTTCTA ACGTCATGAT GACGTCATCA AAATTCCAAG AGAAATTTTC GCACTTTTGT TATGGAGGTT GAACGCATTT TATTACGTGG CGTTGATGTT GACTATTTAT ATTTACGTTT TAAAATTGTT CACATCTTTT AATTGTTACC CATTTTTAAT TCAAACTTTT CCGTCATATC ATTATAAACT GACTTTTACG ATATTGTACT AGTTCTAAGT TAGCTGTTCG AGGCCACACA AAGCGGGCCA CAAAGCCCGC GCTAGCTACG GCATTCCACG GGACGCCGAC ACAGCAGGTT CACAGCAGGC TTACAACCGA AGGCGATCGC CCAGTCCGGT ACAGCTCCAC ACCCCGCTTC GTGCCACGGC CCGACCGACC CACCCGCTAG AGCCAATCCT TTCCCCGTAG TTATGGATCC AGTTTGCCGA CTTTCCTTAT CCACATTGCT GTTCTATCGG TCAGAGGCTA TATTGCCTTT GAGACCTGCC GCAGATATGG GTATGACCTT GCACGACAAA TACACCACCT TCCTCGGATT TTTACGGGCC GACGCGGGCT CTCGGGACAG CACAAGAGAC GTGCTGCTTT ACTGGCCGCA TGTCCCTATC TCCAAGCAAA CCGACTCCAG GGCTGCCGTT CCTTACCACG AACAGAGAAC TCTTCCTGGA ATCACGCCAA CGTTTCCGAG TTCGCTTGCG TAACTGCACT AAGGCGCCGA AGCGCCAATG TCGATTCGGG AATATTAACC CGATTCCTTC TTGGTCCGCT GGGGCTTCAG ACGGCCTTCG TCAATTCCTA AAGGTCGACT GACCCATGTT CTACTGCTGT TCACATGAAA CCCTTATCCA CTTCAACCCT CAAAGTTCCC ATTTAAATAT TTGCTACTAC GCCACCAAGA TCTGCACTAA CGGCTGTTCC ACCGGGCTTG CGCCCTAGGC TTCGACGCGC TCCGCCGTGG CCCTCGTATA CTTGTCGCGG GCTATCGTCG GCGCCTATAC CACCGGTCGG GTATAGACAC GACACTTTAG CGCCATCCAT TTTCAGGGCT GATTGATTCG GCAGGTGAGT TGTTACGCTA CTGTTTTCAG CCAGGGTCCC AACTTGCGGG CTCTCGCTCG ACCTCGCCAA CAGCCCGGAG AAAATCGGCC GGTCATGCGC CGGCGTTCCC TTTTATTTCG GATTTCGTAA AGCCCTGCAG CTCGCCCACA TGTTAGATTC CTTGGTCCGT GTTTCCAGTC GGACCGGGAC GTAGCCGACT TTAGCCGCGA ACCCGCAGCG CCTCGCGATA GAGCACCCGA CCGAAATCGC GCCGAACCGG TACAGGTCGC GTCCCGCGAG GTTCTCCCGC ATCACGCCCG ATCGGCTGAG TCTTTACCTC ACGCCAGAGT AGCGTTGCTG GAATGTGCTG ACAGCTGCTT ACCTGGTTGT GCATTGCTGG GGCCAGTGAC GAGCTTCCAA ATCCAAACAA CTGGGGTTGG CAAACATCTG CAGATGGGTT TGTTCCTTTC TGGGCAAATC TATCGGAAAT ACCCTCAACA TTCAGAGAAC TAATTAAATG TGAATGCAAT CCAGAAAAAG GTTGCTATGG TCGATGCAAT TGTGTTCAAT CAGAGCTTTA ATGCGCAGCG CTTTGCAAAA GCAACGCAGA GACTGCGACA GACTAGGAAC ATTGTCATTA TCTTTTGTTT TATTTATTGT TCTATATATG ACAGTTTGCT TCATTGTTAT TTTATGCTTG TCTCCCTAAA AATGCGAATA AAAGCCAAAA TTTATGTTAT GACATTACAA CACATTAGCA TTAGATTTGT TCTGTTGATT TGTATATAGT ACAGTGGGAG AAGACGGGAC GCCTTTACAT ATTATTCAAA TATCATGTTC GTGGTATAAC CAACCAACAA CGGCCCCTGG GAGTCATTAG AATATGGTTT AATAATTAGA ATGTTTTTGT TTACAATAAA ATGGGACGAA AAAATTTATA TAAAAAAGTG TCCCATCGTC TTCCCCACTC TACTATACAT TTATTAACGG TCCTTACAGG ACAACCGCAA ACCTTTTTTC TCAACACTTA ACGATTTTAA AGGTAAAACT AGCAAAAATC TTTTTTTTAT TAAAATATTG GGAGTTCATA AAAATAAAAT TAAAATAATC TCGTCTGACT AAGTGTCCCA CCTTTTCCAC TCTACCATAT CTGGTAACAC GCAAGCTTCA CGAGATATGT GAAACAGCAG TACGGTACGA CCGCAACGCG TAGATACAAC TAGTTTTTCA ATTGCCCTTT ATTGGAACAA AATTCTGTGT CTCCTTTTTA CACGACACAC GGCGTCGATC CGTGTATATT GTGTTGGGAT GACACAAATA CATACCCTAT ATTCAAAAAG CAATTTGGAT AAGTTCGGCA ATACCCGCCA TGCATTTTAA TAGGTCCTTA CACCGTTACT TCACTTCTAG GATGTCTGTT TAAAAAATAA ATTTTAAGAT TACGACTGAG AGGGGTATAA ATGGGAATTT TATTTCTAAA TTTCCAAAAA ATCGTTTGTA ACAGAAGGTA CTATTATTTT CTAAATAATC CAAGTGATTG TCATTGAATC GCATTTCACG AGACAGCCAT ATGTTTGTCT TCATTTTATC GATTCATTTT CATTCCATGA TTGCGTTTTT AATCTTCAAC CCTCGATAAT ATGACAATCA CCATTCAAAA AATTGCTTTA TAAAAGGCAC TAATACAGTG TTAAACGCAC ATAAACCATT ATTTAGCAGG AAATAAACGC AGCATT