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D B T G R

DataBase of Tunicate Gene Regulation
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About DBTGR

Ci-fkh

Organism: C. intestinalis
Dataset: JGI 1
Description: -3000:+200 region of ci0100153163
Promoter location: scaffold_63:268003-271202:-
Gene alias: ci0100153163

Reported binding sites
Name Motif Factor Position Strand Reference Sequence
sna2 sna Ci-Sna 270923 - 9 ATAGGATGT
T1 T-box Ci-VegTR 270930 + 9 AGGTGCTACA
sna1 sna Ci-Sna 270932 + 9 TAAGGTGCT
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  • reported binding sites
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Sequence
ATTTACACGA TCATACAACT ATATTCTCAT GATAAAAATA TATTATTTTT GTTCAAACCC ATCTTACCCC ACAGTAGTAT ATTATGTAAC ATGTGTTTAT GTAGTGGTAG AAAATATAAG TAACACTGTA ACAAGATGTG TTGGTGCATC ATCTATCATG TGTCTTTCAC AATCCTTAAA AGTCTTACCA TTGCACTTAT TAAACTTTTT TTGAATTTAT ATTTTTTTAA ATAAAAACAA GACTTAAATT TTAAAAGGAA ATTGGTCTGT TAAGGTGCTA CATCCTATGC TTGATTGCTC CCAACATCGA GAGTAAATAT TTGCGGTAGA ATCAAACCCG AACTCCCGCA GATCTGTAGA CTTATTCCCG AGCAAAGTTC CCGGAGCCAA ACTATGATGC TCCATTTTAT TTTTTATTTT TTTAAATTAA ATATTAAATA ATACAAACTA CTGAAATGTG CGTTTAAAGT TATGAAATTA TTCACATTTG TTTAAACCAT TTAATTTGTT TGCATTCTGT TAATTCACGC TGGTTATAAA GCATTTGGGA CCTTTTACAA AGATAGCAAA TTTGTATATA TATAAAATTT CTCTTTCCAT TTTACAATGT TTTTATTTGT AGAAACGACT TTTCATATAG TAAACCATTG TTTTAGTTTA TGTATAAATG TATGCAAAGC CAACAACTTG ATTTGTTGAT TTGATATGGA TCGCCTAAAA AGCAAACGTT TTGTATTTGG CCAAGAGTTT TCGGTTCGTC GGACAAACTT ATCGATATTT GAATATGTTT GCTGGGCTAA TATATACTAT AACAACAGTC ACTATAACAA ACATTGCTAT AGTGTATCTA TTTGGATAAC TTAACTGTGC AAATGTATTG TGTTACTATA TGTTTTGGGA AGTGGGGAAA GTGGCCAGAT GTTGACATTG AACGTAAATT AGAAGTGGCT GAATGCGCAT CATTAGAAAG TTAAGTTTTG TTTGTTCACT GAGAAATGAT AATGATATCA GTTGTACATA TGGGCGGCAC CGCTTTTAAC GTGGGCTGCT GGTGGCGGAA GGTGTTTCTA AAGCGAGTGG CCGCCGACGC TTGACCAGAG CCGTGGCGCG AAAAAGGGGT TAGAGGGCGA GCACGTCTAT GATAATGAGG AAAGAAGGAA AGTGGGCGCT ACTCCAAAGT CGGCATTCCG TCTTATAAGA GAGCTGGAAT TTATTGGAAG CACAATTCAG TTTGTTCAAT AGTGAACAGT GTAGTGGTTT CGTATTTAAT TTAGATCTAC ATCTTACTTG AATTAGTATA GGTTTTCACT AAAGAGTCGA ATTTAAATCG CAAGTATTTA ACAGGTAATT GAGTTACTTT TGCGAAATAG AACAATTGCT GGATGCAGTT AGCTTAGAAA TACTTGCAGC CCTTGCAGCC TAAAATTTGA TTCAGAATTA TTAAAGTTTT AAACTTTAAC CGCAAGAGGT CGCCAAATAT TCAGTAGAAT AAGCACAAAA CTATTGCTGG TTAAATAGTG AGTGCTCCGT TACTACTTGT TGTTTGCGTC CGGAGAGATT TGCGCTGAAC CACGTCGACT TTAATTCAGG TGTCGATTCA ATTACCAGCT TTATTAGTTT TATTTACTTC AGCTAGGTGA CTCAGAACTG GCTCAAGTTG TATGTGGGGG GTAAGCAAGA TTGTGTTGGG GTTACAATCC AGTTATACGC TTCGGTTAAC TTAAAACACA ATTTAGAATC TTGAAATTTA ATATCCGAAA AACAGATTTG TAACAGGAAG TTAATTCAGT AGCAAAGCGG AAACTTATCT TGACATATTT TCGTTATTTT CAGTTTTATA TCTTTGACCA ATAATTTCGC CGCCATTTTT TTCTTAAAAT ATCACGGCCA GTTTTTAACA AGTTATTTTT CTAGCTTTCT ATTTGAAATA TTATACACAA CTGCTGCTGT AATTTCTGAG AAAGCTTTTG AAATCGGATT ACTTTTGCAA GTACAAAAAT GATGTTGTCG TCTCCACCGT CAAAGTACCA ACCCTTCCAA CAGTCTTATG CTACTGGTAT GAACAATATG ACCAACGGTA TGCAGCCTTC ATACGTCAAC CAGATGAACC CAATGTCGCT TACAGCTGCT GGCAACCAGG TCGGATTTAA CCAAGCTTTA CCGCAAGGAT ATGGCGGCGT ATCGTTTAAT GGTATGGGCA CAAGTGCGAT GAACGGCCAC TCACCCCACA GCGTTCAAAT TGCTGCCGCG GCCGCTGCTG CTGTCGGATC CCCGCCTATG GGCACTGCGT ATGCCGGCAT GCCGACGGGC GTTGGAATCA CGCCGAATAT GGCGCTCATG TTAAACAGAA GGACCGAGAA GCAATACAGA AGAAACTACA CCCATGCTAA GCCACCATAC AGTTATATTT CACTCATTAC AATGGCCCTA CAGTCATCGC CCAACAAAAT GATGACCTTA AGTGAAATAT ACAACTGGAT CATGGACCTT TTTCCATTCT ACCGACAAAA CCAACAAAGA TGGCAAAATT CAATCCGCCA TAGCTTGTCA TTCAACGATT GCTTCGTTAA AGTACCGAGA TCGGCAGACA AACCTGGCAA AGGTTCATAT TGGTCGCTAC ACCCAGACGC TGGAAACATG TTCGAAAATG GCTGCTATTT GCGTCGCCAG AAAAGATTCA AAAGCAATAA GAAATCAAAG GGCGCTGGAC CAAGCTCAGA TGAACACTCA CCGCTAGAAC TTGTCCCCAA CGATGCTGTC AGCCCTCCAC CATCGATGTC AAACCCAGGA TCCACCCACA ACAGTCCACA CAACAGTCAT GAAACTTACG CAGATTCAGA CACGGACAAC AAGTCGCCCG ACCTTGCTTC ATCGACGGCC ATAACCTCCC ACGATCAGTT ATACAACCAA CAACACACAT CGCTTGGGCA TGGGATGCTT CAACAAATTC CAGCACCTAC GCACGATAAT TCCTCAGCTA ACCACCCCAG CCAAACAAAC AACCCAGCTT ACCCCAGCCA AACAGATCAC AACGACAAGC TTCAACACCA CCACACTCAA CAGCAATCTG CCGTTGAAGT TAGTTCGCCA TCCAACACCC CAACCTCAGA GAACATGGCA TTGAACACGC ATTCCTTGCA TGAGTTGGTT CCAGCTGGGG ATAAAACCGA CGAGAGAACC CACCATAGCA TTCCACACC