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D B T G R

DataBase of Tunicate Gene Regulation
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About DBTGR

Ci-Sna

Organism: C. intestinalis
Dataset: JGI 2
Description: -3000:+200 region of ci0200205484
Promoter location: chr03q:4125287-4128486:-
Gene alias: ci0200205484

Reported binding sites
Name Motif Factor Position Strand Reference Sequence
E1 E-box unknown 4125695 + 29 CAAATG
E2 E-box unknown 4125725 + 29 CATTTG
E3 E-box unknown 4125817 + 29 CATATG
E4 E-box unknown 4125839 + 29 CACCTG
T2 T-box Ci-VegTR 4125895 - 16 AGGTGCCAAA
Macho1 macho1 Ci-macho1 4125924 + 15 GCCGCCCGCTG
E6 E-box unknown 4125982 + 29 CAACTG
Macho1 macho1 Ci-macho1 4126001 + 15 GCCGCCCGTCG
T3 T-box Ci-VegTR 4126031 - 16 AGGTGGGATC
E7 E-box unknown 4126085 + 29 CAACTG
Macho1 macho1 Ci-macho1 4127558 - 15 GACACCCGCGG
Macho1 macho1 Ci-macho1 4128003 - 15 GCCGCCTGTTG
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  • reported binding sites
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Sequence
CCTGTTTAAA ACCGGCGTTC TGTATAGCGC CTATCACATT ACCACGCCTC GTGTGTCTTT ACCCAAGAGA CGTATATTTC AATCACTTAA CGGCTTAATT CGAAACCGAG CAAGTGTTAT GGTTAGATAC GTCATGTTTC TAATGCAAGG GTATTTTAAT CTATATCTCT ATATACTATT AATAGACAAT CATTATTCCT ATGTAGTTAG AATTTCATCA CATTCAGTAT TTTATTTGTA TATAAGCCAT CTTTGATTTT AAAATAATTT TATTGCCGCC TTAGCCGAGA GCAAACTAAT AACTGGACTT TAAACGATAC GTCACTCGTT ACGGAGTTTT TCCAGACTAT ATTAAAGTGA CGTCAGTGAA ATGAATGCAT GCGCGTGTCG CACTTTGTTA TTTAATGACG TAATCTTGAT GCGGCCACAT AGATTAATGG GTGCACCGAG TACTTTCATC ATACCAGGCG TCCGGTGCCG AAGCAACAGG CGGCTAACCG AAATAGAACA ACGACCAGCA GGAGCGAGCC AACAACTGTT ACCGAAGCGG TCCACTTAAT CCCGGGACAC GCGCGAACTG TACGCGACAA ATATCAAAAT ATAAACAACG GCATTCAACT ATTAATATTG CGCCTTTGGT TACGTTCAAC CGAGTTTTAA AAACCTGTCA CATTTTTAAA CTGAAGGCTG TCTGTATAGT CATCGAAAGA ATATCCCACG ACCCAGCGTG CACACTTGGC CCGTATAACC TTCTGTTTGT GTTGGTTTTT ATTCCGAATA CTCCAAATGA TTGTAGCGCC GGGATACCTT AGTTGGCTTA GTACCGATAG CAGACCGCCC CTCCACGAAA TACAGACACT CTGTTTGTCA CCAGTGTTCT ATCAACTGTC TCGTTTAGCT ACGGTGTACA CATGCTTCTA CATACGTTCC GCGGGTGTCT ATTGTTGCCC TTGTCCTTAC AGTGCGTCTA GAGTAAACTA ACCAAGATAC GATTGCGTAT ACCGGGACAA TAGGATAACA TTTGCACGGA GACACGTGGT CAACTATACG AGGCACGTAA CCGCAGGGCA CTACCAAAGT CCGGTTATTT AAGTTTATAT TTTTGCCTAG CCGTCGAAAA AACATGCATA TATTAAAATT AATAAAACCG TTTATTCTCT ATATCGTACA TTGGTTATGA GCGCTTTAGC ACCAAAATAT AACGAGTTCT ATAAACGCAG TTAAATTCAA TTGATTTTAC CTTACCAGCA GGCAGTTTCT CTCCACAAAC ATTTAAGCCT CATTCCTAAC GTGCGGGAAT TCTCCTCATC CGATAGAAAC ATATTAGTGT ACGGACACTT CTCCATTCTT TGACAATGTG GTGACAGGGG AATATCATTT ACGACAGTGC GAAGCGTCTC CTTTACCGAA TAAACCTCAT GATTCTAACA TTAAAGTCGT TGCAATAGGT ACGGATATTC TAAAATTGAA ACTATGCACA ATCACGGGTA TACCATATAT ATATAGTAGG GTGGGAAAAA TAGGACACCA TTTTATTCTA TTTTCTCGTC CCATTTTGTA GAAAACAAGG AACATTTAAA GAATTATAAA ACCGTATCCG TACGACTACC ATAGACCGTT GTAAATTGTT TAAACACGAT CAAGATATTT GGATATTATG TGCTAACGGT GTCTCATCTA CCCCCACCCT ATTATAACAC CAAACGTTAA AAATTCATTG CACCGAATGT TCCACCGTTT TAGTGTATTA GCGGATTCAG AATGTCGCAC GCGTTCAAAG CGACCCAGTA CCTATTGGTG TCAATTAACA CCATTTTGGA TCGAGTTTTC GGATGAGCAT TTGTGTGAAA ATTAGCGGTT CACTCTGCCG GCCATCCTCA GGTTGAGATA ACGCATCCAT CGCAAAGTAG CAGCTGAAGT GAAGACTTGC GATCGGAGAG AATTTAATTT CGATATTTTT ATTTGCATTG ATTTACAAAA ACATTTATCC AGTTTTTGAT TTTGAAAACA ATAGAGTAGG GTGGGGGGAA ATGGGATACC CTTTCATTCT ATTTTCTTGT TCCATTTAGT AGTAAACAAA GACTTTTCAG AGAATTATAA AACCGTATTC TCACGACTCC CACAGCCCTT TGTTAATTGT TTAAAACATG ATTAGGATAT TTGAATATAA TGTCCCAAAG ATGCCCCATC TTCCGCCACA GTACTATACT TGAAAAATAT ATTGTTCTGC CCCTAAAATA GGAACTTTAG GGGGAGATTT TTCTTACGCA CATGATAAAT TAATATGTTG TTACCGATAA ATTGTAGATA CTTAAAATGA AAAGGTCGCA ATTGTATTTA CCATTATAAA ACAGAAGATC GATGTGTTTT GCTGGACAAA TATTGAGAAA ATCTGTGGCG ACAACTGTGG TCTGATTTAC AGGCGAGTTG GACGGAGTTG ACAGGTCGCG AAAGCGATCC CACCTTCGTG TCTGGGTTTC GAGGTGCCGC CCGTCGTGCA GTAGCAACTG TGCGGTCAAG TTGAGAGCAA GAAGACACTA CAGCGCGCTT TGAAGCGTCC AAGCCGCCCG CTGAGCAGGG CGGATAGCTC GTTTGGCACC TCGTCTGGCA TCGTCCGCAC TGTCAACCTT CTTCGTACAA ACGTCCTCAC CTGCCGCGCA GGATTGCTTC ATATGGCAGA CCGAGTTGAG TGGGAAATCA TATTCTGGTT GCTTCGCTTA TAGCTAGCTC ACTAGAGACT AGAGTGTTGT GAATGATGAA TCATTTGAAT TAAGCATTTT GTTTAGTTGA TCAAATGAGT TTTAGTTTGA TGTTCAGGAC TGCTAAGTAA TGCAGTGAAA GGAATTCTAA AGTGATTATA TTTAGAAATG GGCTATCAGT GCTTGATTAC TGTTGCAGGG TTATTTAAAA ATGCAGCCGA ACAGTCTAAG GAAGCTTAGC TATATTTGAA GGATTATGTA TACTTATTTC ATTATAGCAA TATTTATTTT ATTATTTTAG ACTTTTGGTA CATATTCAAA ATATTAAAAT TCTCACTGTG AAATATATTA CTGTGATTAC ATCATGACCT CCGTCGAGCC CATGCTTTAT CAAGGCAAGC ACGCCGTTCA GAAAAATGAA GGTATATATG CAGACTTATT TATATTATAA TTCATCGCGG CAATTGTTTC TCTTATAAAA ATCAAACGCG ATCATTTTA